pCRM CE7005
| CRM: |
| CE7005 |
|---|
| Overlaps: |
| hairy stripe7 |
|---|
| Reference: |
| Pankratz, 1990 |
|---|
| Berman 2002 ID: |
| |
|---|
| Crm Activity: |
| + |
|---|
| 5' Primer: |
| |
|---|
| 3' Primer: |
| |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L |
|---|
| pCRM start: |
| 8,623,788 |
|---|
| pCRM end: |
| 8,624,718 |
|---|
| pCRM len: |
| 931 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3212377_1_51998 |
|---|
| dpse start: |
| 23,619 |
|---|
| dpse end: |
| 24,893 |
|---|
| dpse len: |
| 1,275 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 7.2 |
|---|
|
| Percent identity: |
| 55.0% |
|---|
|
| D.mel sites: |
| 19 |
|---|
| D.pse sites: |
| 19 |
|---|
| Aligned sites: |
| 7 |
|---|
| Aligned + preserved sites: |
| 17 |
|---|
|
| D.mel site dens: |
| 20.4 |
|---|
| D.pse site dens: |
| 14.9 |
|---|
| Aligned site dens: |
| 7.5 |
|---|
| Aligned + preserved site dens: |
| 18.3 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| 15,555 |
|---|
| 5' gene CG: |
| CG6486 |
|---|
| 5' gene: |
| CG6486 |
|---|
| 5' gene insitu: |
| CG6486 insitu |
|---|
| 5' gene flybase: |
| CG6486 flybase |
|---|
| 5' gene start: |
| 8,608,233 |
|---|
| 5' gene end: |
| 8,609,426 |
|---|
| 5' gene txl start: |
| 8,608,256 |
|---|
|
| pCRM position 3' gene relative: |
| upstream |
|---|
| pCRM position relative to 3' gene: |
| -9,950 |
|---|
| 3' gene CG: |
| CG6494 |
|---|
| 3' gene: |
| h |
|---|
| 3' gene insitu: |
| h insitu |
|---|
| 3' gene flybase: |
| h flybase |
|---|
| 3' gene start: |
| 8,634,668 |
|---|
| 3' gene end: |
| 8,637,949 |
|---|
| 3' gene txl start: |
| 8,634,959 |
|---|
