pCRM CE8039

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8039
Overlaps:
runt 7 stripe
Reference:
Butler, 1992
Berman 2002 ID:
Crm Activity:
positive
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
20,361,764
pCRM end:
20,366,853
pCRM len:
5,090

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
3,212,383
dpse start:
127,510
dpse end:
132,508
dpse len:
4,999

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.3

Percent identity:
45.2%

D.mel sites:
29
D.pse sites:
29
Aligned sites:
8
Aligned + preserved sites:
23

D.mel site dens:
5.7
D.pse site dens:
5.8
Aligned site dens:
1.6
Aligned + preserved site dens:
4.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-14,108
5' gene CG:
CG1338
5' gene:
CG1338
5' gene insitu:
CG1338 insitu
5' gene flybase:
CG1338 flybase
5' gene start:
20,347,656
5' gene end:
20,343,243
5' gene txl start:
20,347,578

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-2
3' gene CG:
CG1849
3' gene:
run
3' gene insitu:
run insitu
3' gene flybase:
run flybase
3' gene start:
20,366,855
3' gene end:
20,369,741
3' gene txl start:
20,367,107