pCRM CE8045

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Region plotRegion plot detailDotplot
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CRM:
CE8045
Overlaps:
hairy stripes 3/4
Reference:
Pankratz, 1990
Berman 2002 ID:
Crm Activity:
positive
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L
pCRM start:
8,622,241
pCRM end:
8,623,983
pCRM len:
1,743

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
3,212,377
dpse start:
152,637
dpse end:
150,492
dpse len:
2,146

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.4

Percent identity:
59.8%

D.mel sites:
22
D.pse sites:
17
Aligned sites:
9
Aligned + preserved sites:
16

D.mel site dens:
12.6
D.pse site dens:
7.9
Aligned site dens:
5.2
Aligned + preserved site dens:
9.2

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
14,008
5' gene CG:
CG6486
5' gene:
CG6486
5' gene insitu:
CG6486 insitu
5' gene flybase:
CG6486 flybase
5' gene start:
8,608,233
5' gene end:
8,609,426
5' gene txl start:
8,608,256

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-10,685
3' gene CG:
CG6494
3' gene:
h
3' gene insitu:
h insitu
3' gene flybase:
h flybase
3' gene start:
8,634,668
3' gene end:
8,637,949
3' gene txl start:
8,634,959