pCRM PCE7001

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Region plotRegion plot detailDotplot
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CRM:
PCE7001
Overlaps:
runt stripe 3
Reference:
Butler, 1992
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
20,357,206
pCRM end:
20,358,294
pCRM len:
1,089

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212383_1_44815
dpse start:
17,707
dpse end:
19,210
dpse len:
1,504

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
9.1

Percent identity:
71.3%

D.mel sites:
27
D.pse sites:
20
Aligned sites:
11
Aligned + preserved sites:
20

D.mel site dens:
24.8
D.pse site dens:
13.3
Aligned site dens:
10.1
Aligned + preserved site dens:
18.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-9,550
5' gene CG:
CG1338
5' gene:
CG1338
5' gene insitu:
CG1338 insitu
5' gene flybase:
CG1338 flybase
5' gene start:
20,347,656
5' gene end:
20,343,243
5' gene txl start:
20,347,578

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-8,561
3' gene CG:
CG1849
3' gene:
run
3' gene insitu:
run insitu
3' gene flybase:
run flybase
3' gene start:
20,366,855
3' gene end:
20,369,741
3' gene txl start:
20,367,107