| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8004 | |
|---|---|---|
| Overlaps: | cluster_at_5C.2 | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 12 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCAATGGCATTTCGCTGTTC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGCGGTGTTGGCATAA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 5,674,913 | |
| pCRM end: | 5,675,606 | |
| pCRM len: | 694 | |
| D.pse region homologous: | 0 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212169_1_41126 | |
| dpse start: | 9,380 | |
| dpse end: | 9,430 | |
| dpse len: | 51 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 0.2 | |
| Percent identity: | 4.8% | |
| D.mel sites: | 15 | |
| D.pse sites: | 2 | |
| Aligned sites: | 1 | |
| Aligned + preserved sites: | 2 | |
| D.mel site dens: | 21.6 | |
| D.pse site dens: | 39.2 | |
| Aligned site dens: | 1.4 | |
| Aligned + preserved site dens: | 2.9 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 17,361 | |
| 5' gene CG: | CG3726 | |
| 5' gene: | CG3726 | |
| 5' gene insitu: | CG3726 insitu | |
| 5' gene flybase: | CG3726 flybase | |
| 5' gene start: | 5,657,552 | |
| 5' gene end: | 5,682,046 | |
| 5' gene txl start: | 5,679,045 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -7,377 | |
| 3' gene CG: | CG12728 | |
| 3' gene: | CG12728 | |
| 3' gene insitu: | CG12728 insitu | |
| 3' gene flybase: | CG12728 flybase | |
| 3' gene start: | 5,682,983 | |
| 3' gene end: | 5,684,763 | |
| 3' gene txl start: | 5,683,058 | |