| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8014 | |
|---|---|---|
| Overlaps: | cluster_at_36F | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 18 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCGCCAAACTCTCCCTAAACCA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGTAACAAATAAGCCGCACAAG-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2L | |
| pCRM start: | 18,400,758 | |
| pCRM end: | 18,401,458 | |
| pCRM len: | 701 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212190_1_56443 | |
| dpse start: | 23,823 | |
| dpse end: | 24,418 | |
| dpse len: | 596 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 3.7 | |
| Percent identity: | 52.8% | |
| D.mel sites: | 15 | |
| D.pse sites: | 6 | |
| Aligned sites: | 5 | |
| Aligned + preserved sites: | 6 | |
| D.mel site dens: | 21.4 | |
| D.pse site dens: | 10.1 | |
| Aligned site dens: | 7.1 | |
| Aligned + preserved site dens: | 8.6 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 36,362 | |
| 5' gene CG: | CG31749 | |
| 5' gene: | CG31749 | |
| 5' gene insitu: | CG31749 insitu | |
| 5' gene flybase: | CG31749 flybase | |
| 5' gene start: | 18,364,396 | |
| 5' gene end: | 18,365,187 | |
| 5' gene txl start: | 18,364,488 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 19,862 | |
| 3' gene CG: | CG10305 | |
| 3' gene: | RpS26 | |
| 3' gene insitu: | RpS26 insitu | |
| 3' gene flybase: | RpS26 flybase | |
| 3' gene start: | 18,421,320 | |
| 3' gene end: | 18,420,580 | |
| 3' gene txl start: | 18,421,145 | |