pCRM PCE8176

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Region plotRegion plot detailDotplot
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CRM:
PCE8176
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
17,123,624
pCRM end:
17,125,668
pCRM len:
2,045

D.pse fasta:
dpse unflanked
dpse arm:
3,213,138
dpse start:
779,065
dpse end:
781,260
dpse len:
2,196

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.7

percent iden:
60.7%

D.mel sites:
23
D.pse sites:
17
Aligned sites:
10
Aligned + preserved sites:
16

D.mel site dens:
11.2
D.pse site dens:
7.7
Aligned site dens:
4.9
Aligned + preserved site dens:
7.8

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+78085
5' gene CG:
CG5488
5' gene:
B-H2
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
B-H2 flybase
5' gene start:
17,045,539
5' gene end:
17,055,121
5' gene txl start:
17,045,828

pCRM position 3' gene relative:
-2,791
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5529
3' gene:
B-H1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
B-H1 flybase
3' gene start:
17,128,459
3' gene end:
17,134,238
3' gene txl start:
17,128,652

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: