pCRM PCE8184

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Region plotRegion plot detailDotplot
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CRM:
PCE8184
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
3,135,927
pCRM end:
3,137,173
pCRM len:
1,247

D.pse fasta:
dpse unflanked
dpse arm:
3,213,236
dpse start:
549,549
dpse end:
551,372
dpse len:
1,824

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.6

percent iden:
65.9%

D.mel sites:
15
D.pse sites:
15
Aligned sites:
9
Aligned + preserved sites:
12

D.mel site dens:
12.0
D.pse site dens:
8.2
Aligned site dens:
7.2
Aligned + preserved site dens:
9.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,859
5' gene CG:
CG32466
5' gene:
rn
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
rn flybase
5' gene start:
3,134,068
5' gene end:
3,099,782
5' gene txl start:
3,134,062

pCRM position 3' gene relative:
+3477
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32468
3' gene:
CG32468
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32468 flybase
3' gene start:
3,140,650
3' gene end:
3,138,685
3' gene txl start:
3,140,650

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: