pCRM PCE8249
| CRM: |
| PCE8249 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 26,129,302 |
|---|
| pCRM end: |
| 26,130,442 |
|---|
| pCRM len: |
| 1,141 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,225 |
|---|
| dpse start: |
| 195,496 |
|---|
| dpse end: |
| 197,050 |
|---|
| dpse len: |
| 1,555 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 5.1 |
|---|
|
| percent iden: |
| 65.3% |
|---|
|
| D.mel sites: |
| 15 |
|---|
| D.pse sites: |
| 11 |
|---|
| Aligned sites: |
| 7 |
|---|
| Aligned + preserved sites: |
| 9 |
|---|
|
| D.mel site dens: |
| 13.1 |
|---|
| D.pse site dens: |
| 7.1 |
|---|
| Aligned site dens: |
| 6.1 |
|---|
| Aligned + preserved site dens: |
| 7.9 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| +36281 |
|---|
| 5' gene CG: |
| CG15532 |
|---|
| 5' gene: |
| hdc |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| hdc flybase |
|---|
| 5' gene start: |
| 26,093,021 |
|---|
| 5' gene end: |
| 26,177,257 |
|---|
| 5' gene txl start: |
| 26,094,031 |
|---|
|
| pCRM position 3' gene relative: |
| +36281 |
|---|
| pCRM position relative to 3' gene: |
| within_intron |
|---|
| 3' gene CG: |
| CG15532 |
|---|
| 3' gene: |
| hdc |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| hdc flybase |
|---|
| 3' gene start: |
| 26,093,021 |
|---|
| 3' gene end: |
| 26,177,257 |
|---|
| 3' gene txl start: |
| 26,094,031 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
