pCRM PCE8329

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8329
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
7,008,925
pCRM end:
7,009,873
pCRM len:
949

D.pse fasta:
dpse unflanked
dpse arm:
3,213,012
dpse start:
419,088
dpse end:
417,971
dpse len:
1,118

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
68.8%

D.mel sites:
13
D.pse sites:
10
Aligned sites:
7
Aligned + preserved sites:
9

D.mel site dens:
13.7
D.pse site dens:
8.9
Aligned site dens:
7.4
Aligned + preserved site dens:
9.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+1645
5' gene CG:
CG1958
5' gene:
CG1958
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1958 flybase
5' gene start:
7,007,280
5' gene end:
7,008,258
5' gene txl start:
7,007,417

pCRM position 3' gene relative:
+16697
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG1677
3' gene:
CG1677
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG1677 flybase
3' gene start:
7,026,570
3' gene end:
7,021,464
3' gene txl start:
7,025,091

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: