pCRM PCE8407
| CRM: |
| PCE8407 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 11,341,949 |
|---|
| pCRM end: |
| 11,342,574 |
|---|
| pCRM len: |
| 626 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,177 |
|---|
| dpse start: |
| 124,681 |
|---|
| dpse end: |
| 124,089 |
|---|
| dpse len: |
| 593 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.4 |
|---|
|
| percent iden: |
| 58.6% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 7 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 7 |
|---|
|
| D.mel site dens: |
| 14.4 |
|---|
| D.pse site dens: |
| 11.8 |
|---|
| Aligned site dens: |
| 6.4 |
|---|
| Aligned + preserved site dens: |
| 11.2 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -9,815 |
|---|
| 5' gene CG: |
| CG14926 |
|---|
| 5' gene: |
| CG14926 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG14926 flybase |
|---|
| 5' gene start: |
| 11,332,134 |
|---|
| 5' gene end: |
| 11,331,183 |
|---|
| 5' gene txl start: |
| 11,332,039 |
|---|
|
| pCRM position 3' gene relative: |
| -11,601 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG4881 |
|---|
| 3' gene: |
| salr |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| salr flybase |
|---|
| 3' gene start: |
| 11,354,175 |
|---|
| 3' gene end: |
| 11,362,268 |
|---|
| 3' gene txl start: |
| 11,355,283 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
