pCRM PCE8425
| CRM: |
| PCE8425 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R.3 |
|---|
| pCRM start: |
| 18,693,096 |
|---|
| pCRM end: |
| 18,694,318 |
|---|
| pCRM len: |
| 1,223 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,226 |
|---|
| dpse start: |
| 1,791,692 |
|---|
| dpse end: |
| 1,790,303 |
|---|
| dpse len: |
| 1,390 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.4 |
|---|
|
| percent iden: |
| 67.3% |
|---|
|
| D.mel sites: |
| 15 |
|---|
| D.pse sites: |
| 11 |
|---|
| Aligned sites: |
| 7 |
|---|
| Aligned + preserved sites: |
| 10 |
|---|
|
| D.mel site dens: |
| 12.3 |
|---|
| D.pse site dens: |
| 7.9 |
|---|
| Aligned site dens: |
| 5.7 |
|---|
| Aligned + preserved site dens: |
| 8.2 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| +16917 |
|---|
| 5' gene CG: |
| CG5403 |
|---|
| 5' gene: |
| retn |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| retn flybase |
|---|
| 5' gene start: |
| 18,676,179 |
|---|
| 5' gene end: |
| 18,698,388 |
|---|
| 5' gene txl start: |
| 18,676,745 |
|---|
|
| pCRM position 3' gene relative: |
| -6,825 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG5411 |
|---|
| 3' gene: |
| CG5411 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG5411 flybase |
|---|
| 3' gene start: |
| 18,701,143 |
|---|
| 3' gene end: |
| 18,723,596 |
|---|
| 3' gene txl start: |
| 18,709,188 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
