pCRM PCE8470
| CRM: |
| PCE8470 |
|---|
| Overlaps: |
| CE8014 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 18,400,276 |
|---|
| pCRM end: |
| 18,401,850 |
|---|
| pCRM len: |
| 1,575 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,190 |
|---|
| dpse start: |
| 229,643 |
|---|
| dpse end: |
| 227,870 |
|---|
| dpse len: |
| 1,774 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.2 |
|---|
|
| percent iden: |
| 47.6% |
|---|
|
| D.mel sites: |
| 20 |
|---|
| D.pse sites: |
| 14 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 13 |
|---|
|
| D.mel site dens: |
| 12.7 |
|---|
| D.pse site dens: |
| 7.9 |
|---|
| Aligned site dens: |
| 3.8 |
|---|
| Aligned + preserved site dens: |
| 8.3 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +102093 |
|---|
| 5' gene CG: |
| CG5803 |
|---|
| 5' gene: |
| Fas3 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| Fas3 flybase |
|---|
| 5' gene start: |
| 18,298,183 |
|---|
| 5' gene end: |
| 18,370,673 |
|---|
| 5' gene txl start: |
| 18,298,770 |
|---|
|
| pCRM position 3' gene relative: |
| +19362 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG10305 |
|---|
| 3' gene: |
| RpS26 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| RpS26 flybase |
|---|
| 3' gene start: |
| 18,421,212 |
|---|
| 3' gene end: |
| 18,420,580 |
|---|
| 3' gene txl start: |
| 18,421,145 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
