pCRM PCE8551

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Region plotRegion plot detailDotplot
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CRM:
PCE8551
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
19,194,846
pCRM end:
19,195,508
pCRM len:
663

D.pse fasta:
dpse unflanked
dpse arm:
3,212,885
dpse start:
12,849
dpse end:
13,615
dpse len:
767

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
75.7%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
15.1
D.pse site dens:
10.4
Aligned site dens:
7.5
Aligned + preserved site dens:
9.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+26418
5' gene CG:
CG17348
5' gene:
drl
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
drl flybase
5' gene start:
19,168,428
5' gene end:
19,186,698
5' gene txl start:
19,168,811

pCRM position 3' gene relative:
+44708
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG31797
3' gene:
CG31797
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31797 flybase
3' gene start:
19,240,216
3' gene end:
19,237,609
3' gene txl start:
19,240,216

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: