pCRM PCE8590

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8590
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,702,114
pCRM end:
1,703,457
pCRM len:
1,344

D.pse fasta:
dpse unflanked
dpse arm:
3,213,069
dpse start:
243,447
dpse end:
244,806
dpse len:
1,360

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
71.4%

D.mel sites:
16
D.pse sites:
13
Aligned sites:
4
Aligned + preserved sites:
13

D.mel site dens:
11.9
D.pse site dens:
9.6
Aligned site dens:
3.0
Aligned + preserved site dens:
9.7

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+32603
5' gene CG:
CG31666
5' gene:
CG31666
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31666 flybase
5' gene start:
1,669,511
5' gene end:
1,699,521
5' gene txl start:
1,692,302

pCRM position 3' gene relative:
-3,111
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG17158
3' gene:
cpb
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
cpb flybase
3' gene start:
1,706,568
3' gene end:
1,708,444
3' gene txl start:
1,706,776

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: