pCRM PCE8595

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Region plotRegion plot detailDotplot
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CRM:
PCE8595
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
23,233,906
pCRM end:
23,234,406
pCRM len:
501

D.pse fasta:
dpse unflanked
dpse arm:
3,213,011
dpse start:
943,603
dpse end:
944,085
dpse len:
483

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
54.7%

D.mel sites:
9
D.pse sites:
5
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
18.0
D.pse site dens:
10.4
Aligned site dens:
8.0
Aligned + preserved site dens:
10.0

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-294
5' gene CG:
CG31062
5' gene:
side
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
side flybase
5' gene start:
23,233,612
5' gene end:
23,191,668
5' gene txl start:
23,233,612

pCRM position 3' gene relative:
-44,869
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG13978
3' gene:
CG13978
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG13978 flybase
3' gene start:
23,279,275
3' gene end:
23,281,269
3' gene txl start:
23,279,343

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: