pCRM PCE8673

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Region plotRegion plot detailDotplot
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CRM:
PCE8673
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
19,537,088
pCRM end:
19,537,895
pCRM len:
808

D.pse fasta:
dpse unflanked
dpse arm:
3,212,589
dpse start:
52,371
dpse end:
53,401
dpse len:
1,031

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
59.8%

D.mel sites:
11
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
8

D.mel site dens:
13.6
D.pse site dens:
7.8
Aligned site dens:
5.0
Aligned + preserved site dens:
9.9

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-23,200
5' gene CG:
CG12701
5' gene:
CG12701
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG12701 flybase
5' gene start:
19,513,888
5' gene end:
19,506,946
5' gene txl start:
19,513,246

pCRM position 3' gene relative:
-5,793
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG12700
3' gene:
skpD
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
skpD flybase
3' gene start:
19,543,688
3' gene end:
19,544,348
3' gene txl start:
19,543,760

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: