pCRM PCE8677

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8677
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
4,901,455
pCRM end:
4,902,168
pCRM len:
714

D.pse fasta:
dpse unflanked
dpse arm:
3,212,591
dpse start:
38,600
dpse end:
37,707
dpse len:
894

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
69.9%

D.mel sites:
9
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
12.6
D.pse site dens:
8.9
Aligned site dens:
5.6
Aligned + preserved site dens:
9.8

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+13129
5' gene CG:
CG7499
5' gene:
Rh50
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Rh50 flybase
5' gene start:
4,888,326
5' gene end:
4,896,985
5' gene txl start:
4,888,634

pCRM position 3' gene relative:
-25,223
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG32233
3' gene:
CG32233
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32233 flybase
3' gene start:
4,927,391
3' gene end:
4,928,000
3' gene txl start:
4,927,662

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: