pCRM PCE8794

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8794
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
4,957,708
pCRM end:
4,958,341
pCRM len:
634

D.pse fasta:
dpse unflanked
dpse arm:
3,213,126
dpse start:
2,901,749
dpse end:
2,901,192
dpse len:
558

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
51.6%

D.mel sites:
9
D.pse sites:
5
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
14.2
D.pse site dens:
9.0
Aligned site dens:
6.3
Aligned + preserved site dens:
7.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+24747
5' gene CG:
CG9755
5' gene:
pum
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
pum flybase
5' gene start:
4,983,088
5' gene end:
4,895,489
5' gene txl start:
4,982,999

pCRM position 3' gene relative:
+24747
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG9755
3' gene:
pum
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
pum flybase
3' gene start:
4,983,088
3' gene end:
4,895,489
3' gene txl start:
4,982,999

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: