pCRM PCE8834

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Region plotRegion plot detailDotplot
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CRM:
PCE8834
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
6,008,609
pCRM end:
6,009,288
pCRM len:
680

D.pse fasta:
dpse unflanked
dpse arm:
3,212,355
dpse start:
87,555
dpse end:
88,354
dpse len:
800

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.9

percent iden:
64.4%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
13.2
D.pse site dens:
7.5
Aligned site dens:
5.9
Aligned + preserved site dens:
7.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+10145
5' gene CG:
CG6467
5' gene:
CG6467
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6467 flybase
5' gene start:
5,998,464
5' gene end:
5,999,456
5' gene txl start:
5,998,503

pCRM position 3' gene relative:
-793
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG6483
3' gene:
CG6483
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6483 flybase
3' gene start:
6,010,081
3' gene end:
6,011,008
3' gene txl start:
6,010,084

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: