pCRM PCE8892

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Region plotRegion plot detailDotplot
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CRM:
PCE8892
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
3,949,014
pCRM end:
3,949,675
pCRM len:
662

D.pse fasta:
dpse unflanked
dpse arm:
3,212,592
dpse start:
896,287
dpse end:
895,532
dpse len:
756

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

percent iden:
70.8%

D.mel sites:
9
D.pse sites:
4
Aligned sites:
4
Aligned + preserved sites:
4

D.mel site dens:
13.6
D.pse site dens:
5.3
Aligned site dens:
6.0
Aligned + preserved site dens:
6.0

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-3,614
5' gene CG:
CG12605
5' gene:
CG12605
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG12605 flybase
5' gene start:
3,945,400
5' gene end:
3,937,468
5' gene txl start:
3,942,690

pCRM position 3' gene relative:
-14,869
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1130
3' gene:
scrt
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
scrt flybase
3' gene start:
3,964,544
3' gene end:
3,969,218
3' gene txl start:
3,965,692

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: