Derek Chiang, Ph.D.

Graduate Student from 2000 to 2005

Ph.D. in 2005 in Molecular and Cell Biology with Michael Eisen

Computational and experimental analysis of promoter architecture in yeasts

Currently Senior Investigator, Novartis Institutes for BioMedical Research

Shultzaberger RK, Chiang DY, Moses AM, Eisen MB (2007). Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
Journal  PubMed  PMC  

Chiang DY, Nix DA, Shultzaberger RK, Gasch AP, Eisen MB (2006). Flexible promoter architecture requirements for coactivator recruitment.
Journal  PubMed  PMC  

Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB (2004). MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
Journal  PubMed  PMC  Web  Software:MONKEY  

Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M et al. (2004). Conservation and evolution of cis-regulatory systems in ascomycete fungi.
Journal  PubMed  PMC  

Moses AM, Chiang DY, Eisen MB (2004). Phylogenetic motif detection by expectation-maximization on evolutionary mixtures.
PubMed  Software:EMnEM  

Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB (2003). Position specific variation in the rate of evolution in transcription factor binding sites.
Journal  PubMed  PMC  

Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB (2003). Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Journal  PubMed  PMC  

Chiang DY, Brown PO, Eisen MB (2001). Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles.