Alan Moses, Ph.D.

Graduate Student from 2000 to 2005

Ph.D. in 2005 in Biophysics with Michael Eisen

Molecular evolution of transcriptional regulation

Currently Associate Professor, Departments of Cell and Systems Biology, Ecology and Evolutionary Biology and Computer Science, University of Toronto

Shultzaberger RK, Chiang DY, Moses AM, Eisen MB (2007). Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
Journal  PubMed  PMC  

Pollard DA, Iyer VN, Moses AM, Eisen MB (2006). Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.
Journal  PubMed  PMC  

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA et al. (2006). In vivo enhancer analysis of human conserved non-coding sequences.
Journal  PubMed  

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY et al. (2006). Large-scale turnover of functional transcription factor binding sites in Drosophila.
Journal  PubMed  PMC  Software:CisEvolver  

Pollard DA, Moses AM, Iyer VN, Eisen MB (2006). Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.
Journal  PubMed  PMC  Software:CisEvolver  

Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S et al. (2006). Primate-specific evolution of an LDLR enhancer.
Journal  PubMed  PMC  

Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB (2004). MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
Journal  PubMed  PMC  Web  Software:MONKEY  

Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M et al. (2004). Conservation and evolution of cis-regulatory systems in ascomycete fungi.
Journal  PubMed  PMC  

Moses AM, Chiang DY, Eisen MB (2004). Phylogenetic motif detection by expectation-maximization on evolutionary mixtures.
PubMed  Software:EMnEM  

Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB (2003). Position specific variation in the rate of evolution in transcription factor binding sites.
Journal  PubMed  PMC  

Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB (2003). Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Journal  PubMed  PMC